I’m sorry, but I don’t think these links are worth much. I don’t think the author is knowledgeable enough about evolution to be an authoritative critic. There are many errors and faulty conclusions made. Here is one example from the first link.
“Generally speaking, it’s accurate to say that science has yet to provide consistent answers to how evolution operates at the molecular, genetic, or even ecological levels in a consistent and supportable way.”
This is a bizarre claim. Major advances have been made in our understanding of evolution at the molecular level, such as understanding how mutations occur at the DNA level, how beneficial mutations usally appear long before they are needed in a population and so they are almost certainly random with respect to their need, and how a simple change in a nucleotide can facilitate growth on a novel energy sources, such as styrene, by subtle alterations in the enzyme coded by the affected gene.
I can’t even imagine what the author means by the comment that science has yet to provide consistent answers to how evolution operates at the genetic level. Evolution is ultimately a study of genetics. Every advance in evolution is an advance in genetics, and there have been many consistent answers here.
Finally, evolution has proved incredibly valuable at the ecological level. Many changes in prey coloration, toxicity, and evasion tactics induced by predation have been carefully documented in the ecological literature. Major changes in virulence of pathogens as well as in host resistance have been observed in pathogen-host complexes. Laboratory studies have shown how amenable to natural selection are various life-history characteristics, such as age of first reproduction and longevity, and how they are sometimes coupled in unexpected ways.
Here is a second example from the first link.
“First, there is a contradiction between ‘punctuated equilibrium’ and ‘gradualism.’ There are two basic possibilities for how naturalistic evolution can occur. This flaw in the theory of evolution occurs because these two ideas are mutually exclusive, and yet there is evidence suggestive of both of them.”
It’s unnecessarily provocative and confusing to call these two explanations mutually exclusive and to say there is a contradiction between them; it’s like calling the color red and the color blue mutually exclusive and contradictory. Punctuated equilibrium and gradualism are simply different descriptions of the tempo of evolutionary change. They each can be true for different times or in different species. In fact, they are! Fossil support exists for each of these explanations.